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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29966026_29968267_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29966026 - 29968267
Intron Length:
2242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTCTGTTATT
Flanking Amino Acid:
SLPFSDEMGDGLIMTVSKPC
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.8
0.49
1
75.3
32.3
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
55.4
0.25
2.3
83.31
38.3

Associated Gene:

Gene:
CACHD1
Ensembl Gene ID:
ENSAPLG00000013355
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044903
29901183 - 29991171
89989
ENSAPLT00000027609
29897777 - 29991394
93618
ENSAPLT00000013932
29897777 - 29991394
93618