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Intron Name: Anas_platyrhynchos_platyrhynchos_8_29968418_29968969_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29968418 - 29968969

Intron Length:

552

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTATTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTGTCTTTATTT

Flanking Amino Acid:

GSYTFLIDNKGYTLMHPSLT

Intron Amino Acid Position:

531

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

1.1

81.4

33.4

Major BPS

0.92

0.9

86.2

29.1

Major PPT

0.81

0.7

84.8

29.6

Minor 5ss

48.4

-0.1

2.5

68.6

42.1

Minor BPS

69.5

0.69

1.5

83.25

38.8

Associated Gene:

Gene:

CACHD1

Ensembl Gene ID:

ENSAPLG00000013355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044903

29901183 - 29991171

89989

ENSAPLT00000027609

29897777 - 29991394

93618

ENSAPLT00000013932

29897777 - 29991394

93618