Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29969094_29969854_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29969094 - 29969854

Intron Length:

761

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTGCCAATGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TGTTTAATAAAA

Flanking Amino Acid:

KFELVRQNILSIPLGSQIIT

Intron Amino Acid Position:

572

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

22.3

Major BPS

81.8

0.79

1.1

34.5

Major PPT

69.4

0.44

0.9

64.1

36.9

Minor 5ss

28.9

-2.4

3.2

39.6

46.4

Minor BPS

49.3

-0

1.9

67.75

37.6

Associated Gene:

Gene:

CACHD1

Ensembl Gene ID:

ENSAPLG00000013355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044903

29901183 - 29991171

89989

ENSAPLT00000027609

29897777 - 29991394

93618

ENSAPLT00000013932

29897777 - 29991394

93618