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Intron Name: Anas_platyrhynchos_platyrhynchos_8_29969973_29971269_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29969973 - 29971269

Intron Length:

1297

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTGTGTTTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAC

U12 Branch Point Sequence:

AAGGAATTAACA

Flanking Amino Acid:

AYNVSYAWKMVQDTSFILCV

Intron Amino Acid Position:

612

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.8

80.6

31.8

Major BPS

73.1

0.57

0.9

73.7

27.1

Major PPT

77.8

0.63

0.9

72.9

37.4

Minor 5ss

35.5

-1.6

3.3

47.5

42.3

Minor BPS

-0.1

1.9

57.43

41.3

Associated Gene:

Gene:

CACHD1

Ensembl Gene ID:

ENSAPLG00000013355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027609

29897777 - 29991394

93618

ENSAPLT00000013932

29897777 - 29991394

93618

ENSAPLT00000044903

29901183 - 29991171

89989