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Intron Name: Anas_platyrhynchos_platyrhynchos_8_29971439_29973907_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29971439 - 29973907

Intron Length:

2469

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAAGCCC

5'SS Class:

major

3'SS Sequence:

TTCCTTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTCAC

U12 Branch Point Sequence:

GCTTCTTTACTA

Flanking Amino Acid:

CLHFKQLATLESPTVMLSAG

Intron Amino Acid Position:

668

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

63.8

40.7

Major BPS

73.5

0.58

0.9

75.4

28.3

Major PPT

88.2

0.86

0.6

88.1

21.7

Minor 5ss

31.4

-2.1

3.3

42.6

44.4

Minor BPS

61.1

0.35

1.6

67.25

40.1

Associated Gene:

Gene:

CACHD1

Ensembl Gene ID:

ENSAPLG00000013355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027609

29897777 - 29991394

93618

ENSAPLT00000013932

29897777 - 29991394

93618

ENSAPLT00000044903

29901183 - 29991171

89989