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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29974051_29974681_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29974051 - 29974681
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAG
U12 Branch Point Sequence:
CTTAGAGGAACC
Flanking Amino Acid:
TRLIANPGLKFSVRNEVMAT
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
49.9
-0
1.7
51.4
46
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
37.8
-0.9
2.4
53
44.2

Associated Gene:

Gene:
CACHD1
Ensembl Gene ID:
ENSAPLG00000013355
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044903
29901183 - 29991171
89989
ENSAPLT00000027609
29897777 - 29991394
93618
ENSAPLT00000013932
29897777 - 29991394
93618