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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29974864_29976576_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29974864 - 29976576
Intron Length:
1713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGGCTCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACTAATT
Flanking Amino Acid:
DKAFDPTRRQWYLHAVANPG
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
70.2
0.46
0.9
67
35.5
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
60.1
0.4
1.9
81.93
39.6

Associated Gene:

Gene:
CACHD1
Ensembl Gene ID:
ENSAPLG00000013355
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044903
29901183 - 29991171
89989
ENSAPLT00000027609
29897777 - 29991394
93618
ENSAPLT00000013932
29897777 - 29991394
93618