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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29976688_29980145_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29976688 - 29980145
Intron Length:
3458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCTTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
TTCTCCTTGCTT
Flanking Amino Acid:
VTISHTVHSSSAQMSSGHSV
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
77.9
0.63
0.8
72
32.5
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
49
0
3.5
82.6
39.5

Associated Gene:

Gene:
CACHD1
Ensembl Gene ID:
ENSAPLG00000013355
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027609
29897777 - 29991394
93618
ENSAPLT00000013932
29897777 - 29991394
93618
ENSAPLT00000044903
29901183 - 29991171
89989