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Intron Name: Anas_platyrhynchos_platyrhynchos_8_29980269_29982215_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29980269 - 29982215

Intron Length:

1947

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

TTGTCGCGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTGAC

U12 Branch Point Sequence:

TAACGGGAGACT

Flanking Amino Acid:

VCNQDGGNKIRCFIMEDRGY

Intron Amino Acid Position:

854

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.4

0.95

0.9

81.8

38.5

Major BPS

55.9

0.15

1.2

Major PPT

61.8

0.27

1.1

43.1

Minor 5ss

43.8

-0.7

3.2

64.9

46.4

Minor BPS

-1.4

2.7

49.7

Associated Gene:

Gene:

CACHD1

Ensembl Gene ID:

ENSAPLG00000013355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044903

29901183 - 29991171

89989

ENSAPLT00000027609

29897777 - 29991394

93618

ENSAPLT00000013932

29897777 - 29991394

93618