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Intron Name: Anas_platyrhynchos_platyrhynchos_8_29982555_29983799_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29982555 - 29983799

Intron Length:

1245

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAC

U12 Branch Point Sequence:

ATACCATTAACA

Flanking Amino Acid:

RFYKFNTSLVGDLTNLVHGS

Intron Amino Acid Position:

927

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

77.9

36.8

Major BPS

69.5

0.49

71.3

30.3

Major PPT

89.6

0.89

0.6

84.8

Minor 5ss

36.4

-1.5

3.3

46.1

43.6

Minor BPS

66.2

0.51

1.6

74.2

36.2

Associated Gene:

Gene:

CACHD1

Ensembl Gene ID:

ENSAPLG00000013355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027609

29897777 - 29991394

93618

ENSAPLT00000013932

29897777 - 29991394

93618

ENSAPLT00000044903

29901183 - 29991171

89989