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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29983961_29984321_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29983961 - 29984321
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTGG
5'SS Class:
major
3'SS Sequence:
TCTGCCTCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
CTGCCTCTGAAG
Flanking Amino Acid:
MVDRLCLNCHRMEQNECECP
Intron Amino Acid Position:
980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
60.6
46.7
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
68.1
0.41
1
68
32.5
Minor 5ss
38.7
-1.3
2.9
47.8
47.7
Minor BPS
43.4
-0.6
1.8
45.5
41.1

Associated Gene:

Gene:
CACHD1
Ensembl Gene ID:
ENSAPLG00000013355
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027609
29897777 - 29991394
93618
ENSAPLT00000013932
29897777 - 29991394
93618
ENSAPLT00000044903
29901183 - 29991171
89989