About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29984733_29985697_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29984733 - 29985697
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TCTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
NTQCNQRTESGDCFGVLDCE
Intron Amino Acid Position:
1048

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
58.1
42.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
36
-1.6
3.3
41.1
45.6
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
CACHD1
Ensembl Gene ID:
ENSAPLG00000013355
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027609
29897777 - 29991394
93618
ENSAPLT00000013932
29897777 - 29991394
93618
ENSAPLT00000044903
29901183 - 29991171
89989