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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29985850_29986077_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29985850 - 29986077
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTCTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTTTGTACCT
Flanking Amino Acid:
SPYVDDLGAIGDEVITLNMI
Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
76.2
39.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.3
0.55
0.9
73.3
36.2
Minor 5ss
44.3
-0.6
2.9
61.9
42.7
Minor BPS
49.3
0.03
2.2
75.46
41.9

Associated Gene:

Gene:
CACHD1
Ensembl Gene ID:
ENSAPLG00000013355
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044903
29901183 - 29991171
89989
ENSAPLT00000027609
29897777 - 29991394
93618
ENSAPLT00000013932
29897777 - 29991394
93618