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Intron Name: Anas_platyrhynchos_platyrhynchos_8_29986240_29987211_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29986240 - 29987211

Intron Length:

972

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCTGA

5'SS Class:

major

3'SS Sequence:

TAATGGTGTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

CTGTTTGTAATG

Flanking Amino Acid:

HQHMSPLAAQEMSVRMSNLE

Intron Amino Acid Position:

1153

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.59

41.3

Major BPS

84.4

0.85

1.1

34.5

Major PPT

60.8

0.24

1.1

54.6

45.3

Minor 5ss

37.3

-1.4

38.1

46.8

Minor BPS

47.7

-0.3

53.42

Associated Gene:

Gene:

CACHD1

Ensembl Gene ID:

ENSAPLG00000013355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044903

29901183 - 29991171

89989

ENSAPLT00000013932

29897777 - 29991394

93618