Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29987290_29988200_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29987290 - 29988200

Intron Length:

911

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

TTTTCTCCCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

ACTTTCATAAAA

Flanking Amino Acid:

DDDSHEDRGIISNTRFIAAV

Intron Amino Acid Position:

1179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

72.9

36.6

Major BPS

87.6

0.93

0.9

89.3

Major PPT

84.9

0.78

0.7

77.7

Minor 5ss

39.2

-1.2

2.7

37.4

Minor BPS

56.7

0.21

1.7

67.69

38.3

Associated Gene:

Gene:

CACHD1

Ensembl Gene ID:

ENSAPLG00000013355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044903

29901183 - 29991171

89989

ENSAPLT00000013932

29897777 - 29991394

93618