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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30004410_30012810_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30004410 - 30012810
Intron Length:
8401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGCTG
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
ATTTCTCTGATG
Flanking Amino Acid:
RNLPAESSSQEIHDLFKDYE
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.6
45.5
Major BPS
79
0.72
1
69
38.9
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
27.8
-2.5
3.5
37.7
47.1
Minor BPS
56.1
0.05
1.7
65.16
36.9

Associated Gene:

Gene:
RAVER2
Ensembl Gene ID:
ENSAPLG00000013160
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013704
30004073 - 30039940
35868