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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30025050_30026049_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30025050 - 30026049
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTAAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAAAC
Flanking Amino Acid:
PQLRGHAVKPVLGTGFPHLI
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
68.2
0.41
1
63.8
40.8
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
60.5
0.31
1.8
71.98
38.9

Associated Gene:

Gene:
RAVER2
Ensembl Gene ID:
ENSAPLG00000013160
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013704
30004073 - 30039940
35868