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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30026127_30029566_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30026127 - 30029566
Intron Length:
3440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTATTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTTATTAATT
Flanking Amino Acid:
PFLQLNKVHQSSVLGSASNL
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.8
0.72
0.9
79.1
38.1
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
69.9
0.7
1.6
84.39
36.6

Associated Gene:

Gene:
RAVER2
Ensembl Gene ID:
ENSAPLG00000013160
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013704
30004073 - 30039940
35868