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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30029941_30031034_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30029941 - 30031034
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGACTTCA
5'SS Class:
weak_major
3'SS Sequence:
TCTAACAGAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCTTGTCTAACA
Flanking Amino Acid:
TVLGIGVMPSFLHLWLTATS
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.2
58.7
36.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
48.5
-0
1.2
46.3
39
Minor 5ss
42.8
-0.8
2.7
55.6
42.7
Minor BPS
54.3
0.13
2.1
71.45
41.1

Associated Gene:

Gene:
RAVER2
Ensembl Gene ID:
ENSAPLG00000013160
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013704
30004073 - 30039940
35868