About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30031317_30033525_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30031317 - 30033525
Intron Length:
2209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
AATTATTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
AATTATTTCACA
Flanking Amino Acid:
QLKSTDTSLGTPLKKQTSLL
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
78.6
37.2
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
75.8
0.58
0.9
69.1
40.7
Minor 5ss
33.5
-1.9
3.2
40.3
45.6
Minor BPS
53.3
0.1
1.9
67.89
38.3

Associated Gene:

Gene:
RAVER2
Ensembl Gene ID:
ENSAPLG00000013160
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013704
30004073 - 30039940
35868