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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30034145_30039793_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30034145 - 30039793
Intron Length:
5649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
GTCAACTTATTT
Flanking Amino Acid:
YSQQHGEYTQVAPSRSEKRG
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
74.4
41.9
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
75.3
0.57
0.8
73.8
31.3
Minor 5ss
42
-0.9
2.9
59.1
45.4
Minor BPS
49.2
0.02
1.8
66.46
44.1

Associated Gene:

Gene:
RAVER2
Ensembl Gene ID:
ENSAPLG00000013160
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013704
30004073 - 30039940
35868