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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30045234_30045696_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30045234 - 30045696
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATAAAT
5'SS Class:
major
3'SS Sequence:
GTTGTGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TAAAATTCAACA
Flanking Amino Acid:
VKDDLDSPVFWYAPECLLQS
Intron Amino Acid Position:
1043

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.8
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
72
0.5
1
64.8
41.4
Minor 5ss
35.4
-1.7
3.1
46.5
42.9
Minor BPS
48.8
-0
1.7
60.04
39

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139