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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30045870_30046655_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30045870 - 30046655
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ACTCATGTAAAT
Flanking Amino Acid:
LLKYAVQICKGMHYLGSRQY
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81.5
0.71
0.7
76.8
25.2
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
43.9
-0.3
2.1
61.9
41.8

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139