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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30047586_30048063_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30047586 - 30048063
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGACAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTCTTTGACA
Flanking Amino Acid:
FLKRIRDLGEGHFGKVELCR
Intron Amino Acid Position:
880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
62.2
0.27
1
61
39.5
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
85.7
1.12
0.9
90.32
23.8

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139