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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30049411_30050168_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30049411 - 30050168
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCACCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GATTCAGTGACT
Flanking Amino Acid:
IPLKDKTLAEKERFYEGHFV
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.7
0.6
0.9
69.2
36.7
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
49.6
0.05
2.3
74.36
42.1

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139