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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30050321_30050752_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30050321 - 30050752
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCT
Flanking Amino Acid:
GIPITVLSRQECVERIPWIA
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.8
34.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.3
0.64
1
84
29.7
Minor 5ss
43.1
-0.8
3.1
57.8
47.2
Minor BPS
68.6
0.66
1.5
83.95
37.1

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139