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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30050889_30051394_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30050889 - 30051394
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TACCTCACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
CTTTTCCTACCT
Flanking Amino Acid:
KQLASALSYLEDKDLVHGNV
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
69.4
0.44
0.8
63.4
32.4
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
56.8
0.29
2
79.84
42.4

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139