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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30051523_30052070_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30051523 - 30052070
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCCGACTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CTTTATGTACCC
Flanking Amino Acid:
LHGVCVRDVEDVMVEEFVEF
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
67.8
0.4
0.9
60.9
34.8
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
45.1
-0.3
2.3
62.36
43.6

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139