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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30053050_30054311_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30053050 - 30054311
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TCTGGTTTGAAA
Flanking Amino Acid:
HRILKEEITQGEHLGRGTRT
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.2
39.5
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
71.6
0.49
0.9
69.4
41.7
Minor 5ss
29.2
-2.4
2.9
36.2
40.8
Minor BPS
46.6
-0.2
2
58.42
41.9

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139