About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30054419_30056396_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30054419 - 30056396
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTCTCT
5'SS Class:
major
3'SS Sequence:
CCCTGCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
GAAGTCTTAACG
Flanking Amino Acid:
LKRCCQPKPREISNLLVATK
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.2
41.5
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
74.8
0.56
0.8
64.7
36.5
Minor 5ss
45.2
-0.5
3.1
65.8
45.4
Minor BPS
60
0.17
1.5
57.93
43.3

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139