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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30057391_30058075_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30057391 - 30058075
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAGTAAA
5'SS Class:
major
3'SS Sequence:
TTGACTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTATTCATTT
Flanking Amino Acid:
NIKNGCHGPICTEYAINKLR
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
77.1
32.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.6
0.69
0.9
77.5
36.7
Minor 5ss
31.5
-2.1
2.4
32.1
35.7
Minor BPS
50.9
0.11
1.9
76.98
40

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139