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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30058234_30059008_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30058234 - 30059008
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
GAATTCTTGACT
Flanking Amino Acid:
SINKQDNKRMELKLSSHDEA
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74.3
34.1
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
78.2
0.64
0.9
76.9
37.3
Minor 5ss
34.9
-1.7
2.9
42.4
38.2
Minor BPS
70.7
0.73
1.2
77.34
38.7

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139