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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30061036_30061570_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30061036 - 30061570
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ACTGTCTTAACT
Flanking Amino Acid:
LKLPELPKDISYKHYIPETL
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
86.8
0.83
0.6
81.3
30.7
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
72.9
0.8
1.4
81.49
40.5

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139