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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30063060_30068015_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30063060 - 30068015
Intron Length:
4956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GATTTTTAAAGT
Flanking Amino Acid:
KTSHRLHYRMRYYFTNWHGT
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.1
0.54
1.1
75.7
38.5
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
49.7
0.06
1.9
68.82
42.5

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139