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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30068140_30070429_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30068140 - 30070429
Intron Length:
2290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTCCTCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TTTCCTCTGACA
Flanking Amino Acid:
ELCIEAARKCSISPLCHNLF
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.9
31.1
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
79.6
0.67
0.9
76.3
32.4
Minor 5ss
36.4
-1.5
2.9
48.3
41.8
Minor BPS
62.2
0.38
1.6
76.92
33.2

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139