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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30070629_30071642_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30070629 - 30071642
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCACTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCTTTAAAT
Flanking Amino Acid:
MQYLNVKEDCKA
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
67.5
40.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.4
0.62
0.8
73.3
30.4
Minor 5ss
40.2
-1.1
2.7
49.2
47.1
Minor BPS
85.3
1.19
1.1
97.3
26.5

Associated Gene:

Gene:
JAK1
Ensembl Gene ID:
ENSAPLG00000012047
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012638
30042584 - 30071722
29139