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Intron Name: Anas_platyrhynchos_platyrhynchos_8_3011620_3017083_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3011620 - 3017083

Intron Length:

5464

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCCTGTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TAACTTTTAAAG

Flanking Amino Acid:

EEKLKHQHLKKKALRERWLL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

81.6

33.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

81.1

0.7

0.9

81.3

30.7

Minor 5ss

43.6

-0.7

2.9

58.5

40.3

Minor BPS

54.2

-0

1.4

55.99

38.9

Associated Gene:

Gene:

PALMD

Ensembl Gene ID:

ENSAPLG00000013197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029142

2984428 - 3029089

44662

ENSAPLT00000013770

3009431 - 3033191

23761