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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30116422_30117049_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30116422 - 30117049
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCAGGAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CTCCTCTCAACT
Flanking Amino Acid:
DAAKPVIELYKGILHSFSGT
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
59.8
0.22
1.1
55
39.1
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
59.4
0.37
1.6
73.07
43.9

Associated Gene:

Gene:
AK4
Ensembl Gene ID:
ENSAPLG00000007058
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007315
30109915 - 30117158
7244