Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30140551_30141304_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30140551 - 30141304

Intron Length:

754

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTAG

5'SS Class:

strong_major

3'SS Sequence:

TGTCTTCTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

TGTCTCCTACTT

Flanking Amino Acid:

TSSKVMQSVASYTKGELDIS

Intron Amino Acid Position:

115

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

68.3

39.1

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

0.74

0.7

81.5

30.6

Minor 5ss

42.2

-0.9

3.1

54.5

49.7

Minor BPS

48.5

-0

1.9

70.49

40.6

Associated Gene:

Gene:

DNAJC6

Ensembl Gene ID:

ENSAPLG00000015954

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028127

30140237 - 30159167

18931

ENSAPLT00000016661

30129431 - 30161383

31953