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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30145545_30146951_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30145545 - 30146951
Intron Length:
1407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTAATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTCTAATTAACA
Flanking Amino Acid:
PKNVCVIHCMDGRAASAVLV
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
71.2
0.48
1
65.8
38.6
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
58.4
0.26
1.8
69.45
42.6

Associated Gene:

Gene:
DNAJC6
Ensembl Gene ID:
ENSAPLG00000015954
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028127
30140237 - 30159167
18931
ENSAPLT00000017985
30141461 - 30162226
20766
ENSAPLT00000016661
30129431 - 30161383
31953