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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30148963_30150528_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30148963 - 30150528
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGAGTT
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAA
U12 Branch Point Sequence:
TCTTGTTCAGTC
Flanking Amino Acid:
STIGGRLQAKMTNTQIFQIQ
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.7
37.1
Major BPS
63.3
0.33
1.1
55.4
41.7
Major PPT
84
0.77
0.8
75.9
38
Minor 5ss
36.7
-1.5
3.9
55.6
43.3
Minor BPS
45
-0.4
2.1
57.76
42.1

Associated Gene:

Gene:
DNAJC6
Ensembl Gene ID:
ENSAPLG00000015954
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028127
30140237 - 30159167
18931
ENSAPLT00000017985
30141461 - 30162226
20766
ENSAPLT00000016661
30129431 - 30161383
31953