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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30150609_30150785_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30150609 - 30150785
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
ALGTTTLKFTKPELDACDSP
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.8
0.45
0.9
67.2
34.3
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
DNAJC6
Ensembl Gene ID:
ENSAPLG00000015954
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016661
30129431 - 30161383
31953
ENSAPLT00000028127
30140237 - 30159167
18931
ENSAPLT00000017985
30141461 - 30162226
20766