Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30151178_30152012_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30151178 - 30152012

Intron Length:

835

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCAGA

5'SS Class:

major

3'SS Sequence:

AATCGTCATTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTATTTTTAATC

Flanking Amino Acid:

SAFFSSLSWQDQKSDKSSSH

Intron Amino Acid Position:

490

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

68.9

43.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

63.6

0.31

Minor 5ss

37.4

-1.4

3.1

48.6

47.2

Minor BPS

75.9

0.79

78.34

30.9

Associated Gene:

Gene:

DNAJC6

Ensembl Gene ID:

ENSAPLG00000015954

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028127

30140237 - 30159167

18931

ENSAPLT00000017985

30141461 - 30162226

20766

ENSAPLT00000016661

30129431 - 30161383

31953