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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30152460_30153554_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30152460 - 30153554
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTTTCTCACAT
Flanking Amino Acid:
SPSPSPRAGEATAFDPFGSS
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86.4
0.82
0.8
80.4
36.6
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
50.7
0.1
1.9
74.04
42.5

Associated Gene:

Gene:
DNAJC6
Ensembl Gene ID:
ENSAPLG00000015954
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016661
30129431 - 30161383
31953
ENSAPLT00000028127
30140237 - 30159167
18931
ENSAPLT00000017985
30141461 - 30162226
20766