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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30157771_30158136_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30157771 - 30158136
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TAAACCTGCATT
Flanking Amino Acid:
SERGKGPANADSKPKVSADF
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
73.2
0.52
1
71.1
38.8
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
48.5
-0
1.9
68.09
42.3

Associated Gene:

Gene:
DNAJC6
Ensembl Gene ID:
ENSAPLG00000015954
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028127
30140237 - 30159167
18931
ENSAPLT00000017985
30141461 - 30162226
20766
ENSAPLT00000016661
30129431 - 30161383
31953