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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30158283_30160232_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30158283 - 30160232
Intron Length:
1950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTCACCTTCATC
Flanking Amino Acid:
AKEMDPEKLKVLEWIEGKER
Intron Amino Acid Position:
894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
83.6
0.76
0.8
81.2
30.7
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
60.7
0.32
1.8
70.67
41.2

Associated Gene:

Gene:
DNAJC6
Ensembl Gene ID:
ENSAPLG00000015954
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017985
30141461 - 30162226
20766
ENSAPLT00000016661
30129431 - 30161383
31953