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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30164351_30164479_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30164351 - 30164479
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGGA
5'SS Class:
major
3'SS Sequence:
TGTGCCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAA
U12 Branch Point Sequence:
CCAACGGTAACC
Flanking Amino Acid:
MAGIKALVGLSFSGA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55.1
44.1
Major BPS
50.7
0.02
1.2
62.1
35.8
Major PPT
77.2
0.61
0.9
69.9
36.5
Minor 5ss
33.1
-1.9
3.7
47.2
48.2
Minor BPS
41.7
-0.6
2.5
51.26
45.6

Associated Gene:

Gene:
LEPROT
Ensembl Gene ID:
ENSAPLG00000029613
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047564
30164335 - 30166621
2287