Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30165240_30166504_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30165240 - 30166504

Intron Length:

1265

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTTCG

5'SS Class:

strong_major

3'SS Sequence:

CCTTGCATTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

ACTGCTTTGATT

Flanking Amino Acid:

FPIILARVEAIKWGACGLVL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

68.8

38.6

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

77.6

0.62

0.9

73.6

35.6

Minor 5ss

35.6

-1.6

2.8

42.5

44.2

Minor BPS

0.46

1.4

72.25

39.7

Associated Gene:

Gene:

LEPROT

Ensembl Gene ID:

ENSAPLG00000029613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047564

30164335 - 30166621

2287