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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30201169_30203101_R

Intron Information:

Intron Rank:
133531
Intron Class:
major
Intron Phase:
Intron Coordinates:
30201169 - 30203101
Intron Length:
1933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTCACTCCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AACTAATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
65.5
0.35
0.8
62.4
34.5
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
48.9
-0.2
1.8
53.37
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019106
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027467
30198105 - 30209386
11282