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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30211132_30214646_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30211132 - 30214646
Intron Length:
3515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
ATATGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCTCAGTTAATT
Flanking Amino Acid:
LVSSRCSCETGSALQNKMYW
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68.6
36.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80.7
0.69
0.9
77.6
40.8
Minor 5ss
27.2
-2.6
3.3
31.5
42.2
Minor BPS
51
0.11
2.2
74.17
42.9

Associated Gene:

Gene:
LEPR
Ensembl Gene ID:
ENSAPLG00000015902
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016634
30210571 - 30243037
32467